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+version = "0.1.0" +edition = "2024" + +[dependencies] +doctate-server = { path = "../server" } +doctate-common = { path = "../doctate-common" } +tokio = { version = "1", features = ["full"] } +reqwest = { version = "0.12", default-features = false, features = ["json", "multipart", "rustls-tls"] } +serde = { version = "1", features = ["derive"] } +serde_json = "1" +clap = { version = "4", features = ["derive"] } +anyhow = "1" +tracing = "0.1" +tracing-subscriber = { version = "0.3", features = ["env-filter"] } +time = { version = "0.3", features = ["formatting", "macros"] } +similar = "2" +tempfile = "3" + +[[bin]] +name = "run_full_case" +path = "src/bin/run_full_case.rs" + +[[bin]] +name = "run_llm_only" +path = "src/bin/run_llm_only.rs" + +[[bin]] +name = "diff_runs" +path = "src/bin/diff_runs.rs" diff --git a/experiments/prompts/llm/baseline.txt b/experiments/prompts/llm/baseline.txt new file mode 100644 index 0000000..9acdd31 --- /dev/null +++ b/experiments/prompts/llm/baseline.txt @@ -0,0 +1,15 @@ +Du bist ein medizinischer Assistent. + +Fasse die folgenden diktierten Abschnitte zu einem zusammenhängenden Text zusammen. Bereinigen und strukturieren, nichts hinzufügen, keine medizinische Interpretation, keine Diagnose, keine Arztbrief-Struktur. Entferne Redundanzen. Spätere Aufnahmen haben Vorrang — Korrekturen, Nachträge und Widersprüche zugunsten der chronologisch letzten Aussage auflösen. Antworte auf Deutsch. Nur der zusammengefasste Text, keine Einleitung, kein Abschlusssatz. + + +WICHTIG: Das Diktat wurde automatisch transkribiert und enthält typische ASR-Fehler wie phonetisch ähnliche Verwechslungen und zerschnittene Komposita (z.B. "Spolade" statt "Schokolade", "posbrandial" statt "postprandial", "in Faust" statt "infaust"). Korrigiere diese Fehler AKTIV. Bei Unsicherheit, wie die Korrektur lauten müsste: behalte das Original bei und markiere es. + + +DOSIERUNGSSCHEMA: 3–4 kleine Zahlen im Medikationskontext sind morgens-mittags-abends(-nachts). Schreibe kompakt: "eins null zwei" → "1-0-2", "eins null zwei null" → "1-0-2-0". Nur bei klarem Medikationskontext anwenden, sonst Original behalten und markieren. + +MARKIERUNGEN IM FORMAT "==text==" signalisieren dem Arzt "bitte prüfen". +Markiere jede korrigierte oder zweifelhafte Stelle. +Markiere zusätzlich: Zahlen ohne klaren Kontext oder Einheit. +Markiere sparsam — geläufige, klar gesprochene Fachbegriffe bleiben unmarkiert. +WICHTIG: Es sind keine anderen Arten von Annotationen erlaubt (z.B. "(unsicher)", "[TODO]"). \ No newline at end of file diff --git a/experiments/prompts/llm/v1_treue.txt b/experiments/prompts/llm/v1_treue.txt new file mode 100644 index 0000000..33b78ea --- /dev/null +++ b/experiments/prompts/llm/v1_treue.txt @@ -0,0 +1,23 @@ +Du bist ein medizinischer Assistent. + +Fasse die folgenden diktierten Abschnitte zu einem zusammenhängenden Text zusammen. Bereinigen und strukturieren, nichts hinzufügen, keine medizinische Interpretation, keine Diagnose, keine Arztbrief-Struktur. Entferne Redundanzen. Spätere Aufnahmen haben Vorrang — Korrekturen, Nachträge und Widersprüche zugunsten der chronologisch letzten Aussage auflösen. Antworte auf Deutsch. Nur der zusammengefasste Text, keine Einleitung, kein Abschlusssatz. + + +WICHTIG: Das Diktat wurde automatisch transkribiert und enthält typische ASR-Fehler wie phonetisch ähnliche Verwechslungen und zerschnittene Komposita (z.B. "Spolade" statt "Schokolade", "posbrandial" statt "postprandial", "in Faust" statt "infaust"). Korrigiere diese Fehler AKTIV. Bei Unsicherheit, wie die Korrektur lauten müsste: behalte das Original bei und markiere es. + + +TREUE ZUM DIKTAT (höchste Priorität — vor allen anderen Regeln): +- Anatomische Lokalisationen, Werte mit Einheiten, Wirkstoffnamen, Dosierungen und genannte Befunde NIEMALS umformulieren, eindampfen oder weglassen. Wörtlich übernehmen. +- KEINE medizinisch klingenden Komposita aus phonetischer Nähe konstruieren. Wenn ein Token kein klares Wort ergibt: markiere es mit ==...== und lass den Rohinhalt stehen, statt zu raten. Lieber ein markiertes Fragment als ein erfundener Begriff. +- KEINE neuen Tatsachen hinzufügen, auch nicht naheliegende medizinische Interpretationen ("Beschwerden" → NICHT "Brustbeschwerden", "erhöhter Blutdruck" → NICHT "hypertensive Krise"). +- Werte mit Einheiten zusammenhalten ("35 ng/l", nicht nur "35"). Wenn die Einheit im Diktat fehlt: markiere die Zahl. +- Diktat-Reihenfolge erhalten — Befunde aus dem Status-Abschnitt nicht in die Anamnese verschieben, auch wenn sie thematisch verwandt wirken. + + +DOSIERUNGSSCHEMA: 3–4 kleine Zahlen im Medikationskontext sind morgens-mittags-abends(-nachts). Schreibe kompakt: "eins null zwei" → "1-0-2", "eins null zwei null" → "1-0-2-0". Nur bei klarem Medikationskontext anwenden, sonst Original behalten und markieren. + +MARKIERUNGEN IM FORMAT "==text==" signalisieren dem Arzt "bitte prüfen". +Markiere jede korrigierte oder zweifelhafte Stelle. +Markiere zusätzlich: Zahlen ohne klaren Kontext oder Einheit. +Markiere sparsam — geläufige, klar gesprochene Fachbegriffe bleiben unmarkiert. +WICHTIG: Es sind keine anderen Arten von Annotationen erlaubt (z.B. "(unsicher)", "[TODO]"). \ No newline at end of file diff --git a/experiments/prompts/llm/v2_treue.txt b/experiments/prompts/llm/v2_treue.txt new file mode 100644 index 0000000..680ebce --- /dev/null +++ b/experiments/prompts/llm/v2_treue.txt @@ -0,0 +1,29 @@ +Du bist ein medizinischer Assistent. + +Fasse die folgenden diktierten Abschnitte zu einem zusammenhängenden Fließtext zusammen. Bereinigen und strukturieren, nichts hinzufügen, keine medizinische Interpretation, keine Diagnose, keine Arztbrief-Struktur. Entferne Redundanzen. Antworte auf Deutsch. Nur der zusammengefasste Text, keine Einleitung, kein Abschlusssatz. + +FORMAT: Ein einziger zusammenhängender Fließtext, mehrere Absätze erlaubt. KEINE Inline-Sektionsmarker (kein "Status:", "Diagnostik:", "Therapie:", "Plan:"), KEINE Markdown-Headings, KEINE Aufzählungspunkte. + + +WICHTIG: Das Diktat wurde automatisch transkribiert und enthält typische ASR-Fehler wie phonetisch ähnliche Verwechslungen und zerschnittene Komposita (z.B. "Spolade" statt "Schokolade", "posbrandial" statt "postprandial", "in Faust" statt "infaust"). Korrigiere diese Fehler AKTIV. Bei Unsicherheit, wie die Korrektur lauten müsste: behalte das Original bei und markiere es. + +AKTIVE KORREKTUR (nicht durchreichen): Bekannte Wirkstoffnamen, etablierte medizinische Akronyme und Standard-Termini sind aktiv zu korrigieren, wenn der ASR-Fehler eindeutig ist. Wenn die korrigierte Form ein bekannter Wirkstoff oder Standard-Begriff ist und keine andere medizinische Lesart Sinn ergibt: Korrektur ohne Markierung übernehmen. + + +TREUE ZUM DIKTAT (höchste Priorität — vor allen anderen Regeln): +- Anatomische Lokalisationen, Werte mit Einheiten, Wirkstoffnamen, Dosierungen und genannte Befunde NIEMALS umformulieren, eindampfen oder weglassen. Wörtlich übernehmen. +- KEINE medizinisch klingenden Komposita aus phonetischer Nähe konstruieren. Wenn ein Token kein klares Wort ergibt: markiere es mit ==...== und lass den Rohinhalt stehen, statt zu raten. +- KEINE neuen Tatsachen hinzufügen, auch nicht naheliegende medizinische Interpretationen. +- Werte mit Einheiten zusammenhalten ("35 ng/l", nicht nur "35"). Wenn die Einheit im Diktat fehlt: markiere die Zahl. +- Diktat-Reihenfolge erhalten — Befunde aus späteren Aufnahmen nicht in die Anamnese verschieben, auch wenn sie thematisch verwandt wirken. + +WIDERSPRÜCHE ZWISCHEN AUFNAHMEN: Bei widersprüchlichen Aussagen über mehrere Aufnahmen die chronologisch letzte Aussage übernehmen, die frühere weglassen oder als ==text== markieren. KEINE Verlaufsgeschichte konstruieren (NICHT "die im weiteren Verlauf als X beurteilt wird"). Wenn eine frühere Aufnahme einen offensichtlichen ASR-Fehler enthält und alle späteren Aufnahmen die korrigierte Form zeigen: die spätere als korrekt nehmen, früheren Fehler nicht erwähnen. + + +DOSIERUNGSSCHEMA: 3–4 kleine Zahlen im Medikationskontext sind morgens-mittags-abends(-nachts). Schreibe kompakt: "eins null zwei" → "1-0-2", "eins null zwei null" → "1-0-2-0". Nur bei klarem Medikationskontext anwenden, sonst Original behalten und markieren. + +MARKIERUNGEN IM FORMAT "==text==" signalisieren dem Arzt "bitte prüfen". +Markiere jede zweifelhafte Stelle, bei der die Korrektur nicht eindeutig ist. +Markiere zusätzlich: Zahlen ohne klaren Kontext oder Einheit. +Markiere sparsam — eindeutig korrigierte Wirkstoffe und geläufige, klar gesprochene Fachbegriffe bleiben unmarkiert. +WICHTIG: Es sind keine anderen Arten von Annotationen erlaubt (z.B. "(unsicher)", "[TODO]"). \ No newline at end of file diff --git a/experiments/prompts/whisper/baseline.txt b/experiments/prompts/whisper/baseline.txt new file mode 100644 index 0000000..e69de29 diff --git a/experiments/prompts/whisper/v1_dosing_minimal.txt b/experiments/prompts/whisper/v1_dosing_minimal.txt new file mode 100644 index 0000000..ce13ed6 --- /dev/null +++ b/experiments/prompts/whisper/v1_dosing_minimal.txt @@ -0,0 +1 @@ +Internistischer Befund: Bisoprolol 5 mg 1-0-0, Ramipril 5 mg 1-0-1, Pantoprazol 40 mg 1-0-0-1, ASS 100 mg 1-0-0. \ No newline at end of file diff --git a/experiments/prompts/whisper_hotwords/README.md b/experiments/prompts/whisper_hotwords/README.md new file mode 100644 index 0000000..07dc708 --- /dev/null +++ b/experiments/prompts/whisper_hotwords/README.md @@ -0,0 +1,29 @@ +# Whisper Hotwords — handle with extreme care + +Whisper-Hotwords bias'en das ASR-Modell aggressiv. Ein Hotword, das in +einem konkreten Fall hilft, kann in einem unverwandten Diktat dazu +führen, dass das Modell den Begriff aus phonetischer Ähnlichkeit +**halluziniert** (orthopädischer Befund schreibt plötzlich +„Holosystolikum"). + +## Bevorzugter Korrekturpfad + +`server/vocab/*.txt` (Gazetteer, edit-distance ≤ 2 mit Dict-Veto). +Strukturell halluzinationsfrei, weil Korrekturen nur greifen, wenn +Whisper bereits ein Token erzeugt hat, das phonetisch nah am +Vocabulary-Eintrag liegt. + +## Wenn überhaupt Hotwords + +- Nur generische Termini aus einem breiten Fall-Korpus +- Nicht aus einem einzelnen Test-Fall heraus optimiert (Curve-Fitting) +- Vor Aktivierung: Negativ-Kontrolle gegen Diktate aus mehreren + Fachbereichen — sucht das Modell nach Halluzinationen, die nur durch + den Hotword-Bias entstehen? + +## Datei-Konvention + +Hotword-Files in diesem Verzeichnis enthalten **ausschließlich +whitespace-separierte Termini** (kein Markdown, keine Kommentare), +weil der gesamte File-Inhalt 1:1 als `hotwords`-Form-Field an die +Whisper-API gesendet wird. diff --git a/experiments/src/bin/diff_runs.rs b/experiments/src/bin/diff_runs.rs new file mode 100644 index 0000000..767a24f --- /dev/null +++ b/experiments/src/bin/diff_runs.rs @@ -0,0 +1,121 @@ +//! Side-by-side diff between two runs. +//! +//! Usage: +//! diff_runs +//! +//! Prints a unified diff of `document.md` and a summary of `==` markers +//! per run, with variant identities pulled from `meta.json`. + +use std::path::{Path, PathBuf}; + +use anyhow::{Context, Result}; +use clap::Parser; +use similar::{ChangeTag, TextDiff}; + +#[derive(Parser, Debug)] +#[command(name = "diff_runs")] +struct Args { + run_a: PathBuf, + run_b: PathBuf, +} + +fn main() -> Result<()> { + let args = Args::parse(); + + println!("=== A: {}", args.run_a.display()); + print_meta_summary(&args.run_a)?; + println!("=== B: {}", args.run_b.display()); + print_meta_summary(&args.run_b)?; + + let doc_a = read_or_empty(&args.run_a.join("document.md"))?; + let doc_b = read_or_empty(&args.run_b.join("document.md"))?; + + println!("\n--- document.md diff (A → B) ---"); + print_diff(&doc_a, &doc_b); + + println!( + "\n=={{}}== markers A: {} B: {}", + count_markers(&doc_a), + count_markers(&doc_b) + ); + + diff_transcripts(&args.run_a, &args.run_b)?; + + Ok(()) +} + +fn print_meta_summary(run: &Path) -> Result<()> { + let meta_path = run.join("meta.json"); + let raw = match std::fs::read_to_string(&meta_path) { + Ok(s) => s, + Err(_) => { + println!(" (no meta.json)"); + return Ok(()); + } + }; + let v: serde_json::Value = serde_json::from_str(&raw).context("parsing meta.json")?; + let w = v.get("whisper_variant").and_then(|x| x.as_str()).unwrap_or("?"); + let h = v + .get("whisper_hotwords_variant") + .and_then(|x| x.as_str()) + .unwrap_or("none"); + let l = v.get("llm_variant").and_then(|x| x.as_str()).unwrap_or("?"); + let model = v.get("llm_model").and_then(|x| x.as_str()).unwrap_or("?"); + let wallclock = v + .pointer("/timings_ms/wallclock_ms") + .and_then(|x| x.as_u64()) + .unwrap_or(0); + println!(" whisper={w} hotwords={h} llm={l} model={model} wallclock={wallclock}ms"); + Ok(()) +} + +fn read_or_empty(p: &Path) -> Result { + Ok(std::fs::read_to_string(p).unwrap_or_default()) +} + +fn print_diff(a: &str, b: &str) { + let diff = TextDiff::from_lines(a, b); + for change in diff.iter_all_changes() { + let sign = match change.tag() { + ChangeTag::Equal => " ", + ChangeTag::Insert => "+ ", + ChangeTag::Delete => "- ", + }; + print!("{sign}{change}"); + } +} + +fn count_markers(text: &str) -> usize { + text.matches("==").count() / 2 +} + +fn diff_transcripts(a: &Path, b: &Path) -> Result<()> { + let ta = a.join("transcripts"); + let tb = b.join("transcripts"); + if !ta.exists() || !tb.exists() { + return Ok(()); + } + let mut names: Vec = std::fs::read_dir(&ta)? + .filter_map(|e| e.ok()) + .filter_map(|e| { + let p = e.path(); + if p.extension().and_then(|s| s.to_str()) == Some("txt") { + p.file_name().map(|s| s.to_string_lossy().into_owned()) + } else { + None + } + }) + .collect(); + names.sort(); + + for name in names { + let txt_a = read_or_empty(&ta.join(&name))?; + let txt_b = read_or_empty(&tb.join(&name))?; + if txt_a == txt_b { + continue; + } + println!("\n--- transcripts/{name} (A → B) ---"); + print_diff(&txt_a, &txt_b); + } + Ok(()) +} diff --git a/experiments/src/bin/run_full_case.rs b/experiments/src/bin/run_full_case.rs new file mode 100644 index 0000000..b44b4e8 --- /dev/null +++ b/experiments/src/bin/run_full_case.rs @@ -0,0 +1,358 @@ +//! Full-pipeline runner: audio → ffmpeg → whisper → gazetteer → LLM. +//! +//! Reproduces the production pipeline 1:1 by reusing the `doctate-server` +//! crate's modules. Outputs go strictly under `/runs//`. +//! +//! Usage: +//! run_full_case \ +//! --case-dir case_c414cf52 \ +//! --whisper-prompt prompts/whisper/v1_dosing_minimal.txt \ +//! --whisper-hotwords prompts/whisper_hotwords/v1_drugs.txt \ +//! --llm-prompt prompts/llm/baseline.txt \ +//! --runs 3 +//! +//! Path conventions: +//! - `--case-dir` is relative to the experiments/ working directory +//! - `--*-prompt` and `--*-hotwords` are paths relative to `--case-dir` +//! - `--settings` defaults to `../server/settings.toml` +//! - `--vocab-dir` defaults to `../server/vocab` + +use std::path::{Path, PathBuf}; +use std::time::{Duration, Instant}; + +use anyhow::{Context, Result}; +use clap::Parser; +use doctate_experiments::{ + GazetteerDictMode, RecordingMeta, RunMeta, RunTimings, atomic_write, load_prompt, run_id, +}; +use doctate_server::analyze::llm::{self as srv_llm, LlmSettings as LlmCallSettings}; +use doctate_server::analyze::prompt::render_prompt; +use doctate_server::analyze::{AnalysisInput, RecordingInput}; +use doctate_server::config::WhisperUserSettings; +use doctate_server::gazetteer::{Gazetteer, SpellbookDict}; +use doctate_server::settings::Settings; +use doctate_server::transcribe::ffmpeg::remux_faststart; +use doctate_server::transcribe::whisper as srv_whisper; +use tracing::{info, warn}; + +#[derive(Parser, Debug)] +#[command(name = "run_full_case")] +struct Args { + /// Directory containing `audios/`, `prompts/`, `runs/` for one case. + #[arg(long)] + case_dir: PathBuf, + + /// Path to a Whisper `initial_prompt` file. Empty file → no + /// initial_prompt forwarded. Prompts are fall-übergreifend, typically + /// under `prompts/whisper/`. + #[arg(long)] + whisper_prompt: PathBuf, + + /// Optional Whisper `hotwords` file (handle with care — see + /// `prompts/whisper_hotwords/README.md`). + #[arg(long)] + whisper_hotwords: Option, + + /// Path to the LLM system prompt file. Typically under `prompts/llm/`. + #[arg(long)] + llm_prompt: PathBuf, + + /// Number of runs to perform with the same variants. 2–3 recommended + /// to surface model drift. + #[arg(long, default_value_t = 1)] + runs: u32, + + /// Settings file (URL, model, API key for LLM; URL, timeout for Whisper). + #[arg(long, default_value = "../server/settings.toml")] + settings: PathBuf, + + /// Vocab directory for the gazetteer. + #[arg(long, default_value = "../server/vocab")] + vocab_dir: PathBuf, + + /// Hunspell stem (e.g. `/usr/share/hunspell/de_DE`). Optional; if the + /// files don't exist, gazetteer runs without dict-veto. + #[arg(long, default_value = "/usr/share/hunspell/de_DE")] + hunspell_stem: PathBuf, + + /// Skip the LLM stage. Useful for measuring pure Whisper-prompt + /// effects without burning Ionos tokens. + #[arg(long, default_value_t = false)] + no_llm: bool, +} + +#[tokio::main] +async fn main() -> Result<()> { + init_tracing(); + let args = Args::parse(); + + let case_dir = args + .case_dir + .canonicalize() + .with_context(|| format!("case-dir not found: {}", args.case_dir.display()))?; + + let settings_path = args.settings.to_string_lossy(); + let settings = Settings::load_or_default(&settings_path); + if !settings.llm_configured() && !args.no_llm { + anyhow::bail!( + "LLM not configured in {settings_path}. Set [llm].url and [llm].model, or pass --no-llm." + ); + } + + let whisper_prompt_text = load_prompt(&args.whisper_prompt)?; + let whisper_hotwords_text = match args.whisper_hotwords.as_ref() { + Some(p) => Some(load_prompt(p)?), + None => None, + }; + let llm_system_prompt = load_prompt(&args.llm_prompt)?; + + let user_whisper = WhisperUserSettings { + language: Some("de".to_string()), + hotwords: whisper_hotwords_text.clone().filter(|s| !s.is_empty()), + initial_prompt: Some(whisper_prompt_text.clone()).filter(|s| !s.is_empty()), + }; + + let (gazetteer, dict_mode) = load_gazetteer(&args.vocab_dir, &args.hunspell_stem).await?; + info!( + vocab_dir = %args.vocab_dir.display(), + loaded = gazetteer.len(), + "gazetteer ready" + ); + + let audios = collect_audios(&case_dir.join("audios"))?; + if audios.is_empty() { + anyhow::bail!("no .m4a files found under {}/audios", case_dir.display()); + } + info!(count = audios.len(), "audios discovered"); + + let http = reqwest::Client::builder() + .build() + .context("building reqwest client")?; + + let whisper_variant_id = stem(&args.whisper_prompt); + let hotwords_variant_id = args.whisper_hotwords.as_ref().map(stem); + let llm_variant_id = stem(&args.llm_prompt); + + let runs_root = data_runs_root(&case_dir)?; + + for run_index in 1..=args.runs { + let id = run_id(&whisper_variant_id, &llm_variant_id, run_index); + let run_dir = runs_root.join(&id); + std::fs::create_dir_all(run_dir.join("transcripts"))?; + + info!(run = %id, "begin run"); + let wallclock = Instant::now(); + let mut timings = RunTimings::default(); + let mut recordings_meta = Vec::new(); + let mut analysis_recordings = Vec::new(); + + for audio in &audios { + let recorded_at = stem(audio); + let t_whisper = Instant::now(); + let raw = transcribe_one( + &http, + &settings, + &user_whisper, + audio, + ) + .await + .with_context(|| format!("transcribing {}", audio.display()))?; + timings.whisper_total_ms += t_whisper.elapsed().as_millis() as u64; + + let t_gaz = Instant::now(); + let cleaned = gazetteer.replace(&raw); + timings.gazetteer_total_ms += t_gaz.elapsed().as_millis() as u64; + + let transcript_path = run_dir.join("transcripts").join(format!("{recorded_at}.txt")); + atomic_write(&transcript_path, &cleaned)?; + + recordings_meta.push(RecordingMeta { + recorded_at: recorded_at.clone(), + audio_path: audio.display().to_string(), + whisper_chars_raw: raw.chars().count(), + whisper_chars_after_gazetteer: cleaned.chars().count(), + }); + analysis_recordings.push(RecordingInput { + recorded_at, + text: cleaned, + }); + } + + let last_recording_mtime = audios + .last() + .map(|p| stem(p)) + .unwrap_or_else(|| "unknown".to_string()); + let analysis_input = AnalysisInput { + last_recording_mtime, + recordings: analysis_recordings, + }; + let user_content = render_prompt(&analysis_input); + atomic_write(&run_dir.join("llm_input.txt"), &user_content)?; + + if !args.no_llm { + let t_llm = Instant::now(); + let document_raw = call_llm(&http, &settings, &llm_system_prompt, &user_content).await?; + timings.llm_ms = t_llm.elapsed().as_millis() as u64; + // Post-LLM gazetteer pass — mirrors `server/src/analyze/worker.rs:150`. + // Catches LLM-drift back to non-canonical forms (e.g. anglicization) + // that the pre-LLM pass cannot reach because the drift happens + // inside the LLM itself. + let document = gazetteer.replace(&document_raw); + atomic_write(&run_dir.join("document.md"), &document)?; + } + + timings.wallclock_ms = wallclock.elapsed().as_millis() as u64; + + let meta = RunMeta { + run_id: id.clone(), + created_at_utc: time::OffsetDateTime::now_utc() + .format(&time::format_description::well_known::Iso8601::DEFAULT) + .unwrap_or_default(), + case: case_dir + .file_name() + .map(|s| s.to_string_lossy().into_owned()) + .unwrap_or_default(), + whisper_variant: whisper_variant_id.clone(), + whisper_hotwords_variant: hotwords_variant_id.clone(), + llm_variant: llm_variant_id.clone(), + whisper_url: settings.whisper.url.clone(), + llm_url: settings.llm.url.clone(), + llm_model: settings.llm.model.clone(), + llm_temperature: settings.llm.temperature, + vocab_dir: args.vocab_dir.display().to_string(), + vocab_loaded: gazetteer.len(), + gazetteer_dict: dict_mode_clone(&dict_mode), + timings_ms: timings, + recordings: recordings_meta, + }; + let meta_json = serde_json::to_string_pretty(&meta)?; + atomic_write(&run_dir.join("meta.json"), &meta_json)?; + + info!(run = %id, wallclock_ms = meta.timings_ms.wallclock_ms, "run done"); + } + + Ok(()) +} + +fn init_tracing() { + use tracing_subscriber::EnvFilter; + let filter = EnvFilter::try_from_default_env().unwrap_or_else(|_| EnvFilter::new("info")); + tracing_subscriber::fmt().with_env_filter(filter).init(); +} + +async fn load_gazetteer( + vocab_dir: &Path, + hunspell_stem: &Path, +) -> Result<(Gazetteer, GazetteerDictMode)> { + let g = Gazetteer::load_dir(vocab_dir) + .await + .with_context(|| format!("loading vocab dir {}", vocab_dir.display()))?; + let aff = hunspell_stem.with_extension("aff"); + let dic = hunspell_stem.with_extension("dic"); + if aff.exists() && dic.exists() { + match SpellbookDict::load(hunspell_stem) { + Ok(d) => { + let g = g.with_dict(Box::new(d)); + Ok(( + g, + GazetteerDictMode::SpellbookHunspell { + stem: hunspell_stem.display().to_string(), + }, + )) + } + Err(e) => { + warn!( + err = %e, + "spellbook dict load failed; gazetteer running without dict-veto" + ); + Ok((g, GazetteerDictMode::NoDict)) + } + } + } else { + warn!( + stem = %hunspell_stem.display(), + "hunspell .aff/.dic not found; gazetteer running without dict-veto" + ); + Ok((g, GazetteerDictMode::NoDict)) + } +} + +fn dict_mode_clone(m: &GazetteerDictMode) -> GazetteerDictMode { + match m { + GazetteerDictMode::NoDict => GazetteerDictMode::NoDict, + GazetteerDictMode::SpellbookHunspell { stem } => GazetteerDictMode::SpellbookHunspell { + stem: stem.clone(), + }, + } +} + +/// Resolve the per-case output root under `experiments/_data//runs/`. +/// Inputs (audios/, prompts/, reference/) live under `case_/` and are +/// versioned; outputs go to `_data/` and are gitignored. +fn data_runs_root(case_dir: &Path) -> Result { + let case_name = case_dir + .file_name() + .and_then(|s| s.to_str()) + .ok_or_else(|| anyhow::anyhow!("case-dir has no file name"))?; + let experiments_root = case_dir + .parent() + .ok_or_else(|| anyhow::anyhow!("case-dir has no parent"))?; + let runs = experiments_root.join("_data").join(case_name).join("runs"); + std::fs::create_dir_all(&runs)?; + Ok(runs) +} + +fn collect_audios(dir: &Path) -> Result> { + let mut out = Vec::new(); + for entry in std::fs::read_dir(dir)? { + let entry = entry?; + let path = entry.path(); + if path.extension().and_then(|s| s.to_str()) == Some("m4a") { + out.push(path); + } + } + out.sort(); + Ok(out) +} + +fn stem>(p: P) -> String { + p.as_ref() + .file_stem() + .map(|s| s.to_string_lossy().into_owned()) + .unwrap_or_else(|| "unknown".to_string()) +} + +async fn transcribe_one( + http: &reqwest::Client, + settings: &Settings, + user_whisper: &WhisperUserSettings, + audio: &Path, +) -> Result { + let remuxed = remux_faststart(audio) + .await + .with_context(|| format!("ffmpeg remux failed for {}", audio.display()))?; + let timeout = Duration::from_secs(settings.whisper.timeout_seconds); + let text = srv_whisper::transcribe(http, &settings.whisper.url, remuxed.path(), timeout, user_whisper) + .await + .map_err(|e| anyhow::anyhow!("whisper transcribe failed: {e}"))?; + Ok(text) +} + +async fn call_llm( + http: &reqwest::Client, + settings: &Settings, + system_prompt: &str, + user_content: &str, +) -> Result { + let call = LlmCallSettings { + base_url: &settings.llm.url, + api_key: &settings.llm.api_key, + model: &settings.llm.model, + temperature: settings.llm.temperature, + }; + let timeout = Duration::from_secs(settings.llm.timeout_seconds); + let out = srv_llm::chat_once(http, &call, system_prompt, user_content, timeout) + .await + .map_err(|e| anyhow::anyhow!("llm chat failed: {e}"))?; + Ok(out) +} diff --git a/experiments/src/bin/run_llm_only.rs b/experiments/src/bin/run_llm_only.rs new file mode 100644 index 0000000..a748ae8 --- /dev/null +++ b/experiments/src/bin/run_llm_only.rs @@ -0,0 +1,224 @@ +//! LLM-only iteration: skip Whisper, use the production-bereinigten +//! transcripts that already live next to the audio files (`.json` +//! contains the gazetteer-cleaned text the server uses as LLM input). +//! +//! Usage: +//! run_llm_only \ +//! --case-dir case_c414cf52 \ +//! --transcripts-dir /home/brummel/dev/doctate/tmpdata/dr_mueller/c414cf52-1ca8-440d-844f-a7d19ed584fd \ +//! --llm-prompt prompts/llm/v1_keep_headings.txt \ +//! --runs 3 + +use std::path::{Path, PathBuf}; + +fn data_runs_root(case_dir: &Path) -> anyhow::Result { + let case_name = case_dir + .file_name() + .and_then(|s| s.to_str()) + .ok_or_else(|| anyhow::anyhow!("case-dir has no file name"))?; + let experiments_root = case_dir + .parent() + .ok_or_else(|| anyhow::anyhow!("case-dir has no parent"))?; + let runs = experiments_root.join("_data").join(case_name).join("runs"); + std::fs::create_dir_all(&runs)?; + Ok(runs) +} +use std::time::{Duration, Instant}; + +use anyhow::{Context, Result}; +use clap::Parser; +use doctate_experiments::{ + GazetteerDictMode, RecordingMeta, RunMeta, RunTimings, atomic_write, load_prompt, run_id, +}; +use doctate_server::analyze::llm::{self as srv_llm, LlmSettings as LlmCallSettings}; +use doctate_server::analyze::prompt::render_prompt; +use doctate_server::analyze::{AnalysisInput, RecordingInput}; +use doctate_server::gazetteer::Gazetteer; +use doctate_server::settings::Settings; +use serde::Deserialize; +use tracing::info; + +#[derive(Parser, Debug)] +#[command(name = "run_llm_only")] +struct Args { + #[arg(long)] + case_dir: PathBuf, + + /// Directory containing the `.json` transcript files. + /// Typically `tmpdata///`. + #[arg(long)] + transcripts_dir: PathBuf, + + #[arg(long)] + llm_prompt: PathBuf, + + #[arg(long, default_value_t = 1)] + runs: u32, + + #[arg(long, default_value = "../server/settings.toml")] + settings: PathBuf, + + /// Vocab dir for the Post-LLM gazetteer pass. Mirrors the server's + /// `analyze/worker.rs:150` post-AI normalization. Pass `none` to skip. + #[arg(long, default_value = "../server/vocab")] + vocab_dir: PathBuf, +} + +#[derive(Debug, Deserialize)] +struct StoredTranscript { + transcript: TranscriptInner, +} + +#[derive(Debug, Deserialize)] +struct TranscriptInner { + text: String, +} + +#[tokio::main] +async fn main() -> Result<()> { + init_tracing(); + let args = Args::parse(); + + let case_dir = args + .case_dir + .canonicalize() + .with_context(|| format!("case-dir not found: {}", args.case_dir.display()))?; + let settings = Settings::load_or_default(&args.settings.to_string_lossy()); + if !settings.llm_configured() { + anyhow::bail!("LLM not configured in {}", args.settings.display()); + } + + let llm_system_prompt = load_prompt(&args.llm_prompt)?; + let recordings = load_transcripts(&args.transcripts_dir)?; + info!(count = recordings.len(), "transcripts loaded"); + + let analysis_input = AnalysisInput { + last_recording_mtime: recordings + .last() + .map(|r| r.recorded_at.clone()) + .unwrap_or_default(), + recordings, + }; + let user_content = render_prompt(&analysis_input); + + let http = reqwest::Client::builder().build()?; + let llm_variant_id = stem(&args.llm_prompt); + let runs_root = data_runs_root(&case_dir)?; + + let gazetteer = Gazetteer::load_dir(&args.vocab_dir) + .await + .with_context(|| format!("loading vocab dir {}", args.vocab_dir.display()))?; + info!(loaded = gazetteer.len(), vocab_dir = %args.vocab_dir.display(), "post-llm gazetteer ready"); + + for run_index in 1..=args.runs { + let id = run_id("none", &llm_variant_id, run_index); + let run_dir = runs_root.join(&id); + std::fs::create_dir_all(&run_dir)?; + + atomic_write(&run_dir.join("llm_input.txt"), &user_content)?; + + let wallclock = Instant::now(); + let t_llm = Instant::now(); + let document_raw = call_llm(&http, &settings, &llm_system_prompt, &user_content).await?; + // Post-LLM gazetteer pass — mirrors server/src/analyze/worker.rs:150 + let document = gazetteer.replace(&document_raw); + let timings = RunTimings { + whisper_total_ms: 0, + gazetteer_total_ms: 0, + llm_ms: t_llm.elapsed().as_millis() as u64, + wallclock_ms: wallclock.elapsed().as_millis() as u64, + }; + atomic_write(&run_dir.join("document.md"), &document)?; + + let meta = RunMeta { + run_id: id.clone(), + created_at_utc: time::OffsetDateTime::now_utc() + .format(&time::format_description::well_known::Iso8601::DEFAULT) + .unwrap_or_default(), + case: case_dir + .file_name() + .map(|s| s.to_string_lossy().into_owned()) + .unwrap_or_default(), + whisper_variant: "none".into(), + whisper_hotwords_variant: None, + llm_variant: llm_variant_id.clone(), + whisper_url: String::new(), + llm_url: settings.llm.url.clone(), + llm_model: settings.llm.model.clone(), + llm_temperature: settings.llm.temperature, + vocab_dir: format!("{} (post-LLM only)", args.vocab_dir.display()), + vocab_loaded: gazetteer.len(), + gazetteer_dict: GazetteerDictMode::NoDict, + timings_ms: timings, + recordings: Vec::::new(), + }; + atomic_write( + &run_dir.join("meta.json"), + &serde_json::to_string_pretty(&meta)?, + )?; + info!(run = %id, "llm-only run done"); + } + + Ok(()) +} + +fn init_tracing() { + use tracing_subscriber::EnvFilter; + let filter = EnvFilter::try_from_default_env().unwrap_or_else(|_| EnvFilter::new("info")); + tracing_subscriber::fmt().with_env_filter(filter).init(); +} + +fn load_transcripts(dir: &Path) -> Result> { + let mut out = Vec::new(); + for entry in std::fs::read_dir(dir)? { + let entry = entry?; + let path = entry.path(); + if path.extension().and_then(|s| s.to_str()) != Some("json") { + continue; + } + let recorded_at = path + .file_stem() + .and_then(|s| s.to_str()) + .unwrap_or("") + .to_string(); + if recorded_at.is_empty() || recorded_at == "oneliner" { + continue; + } + let raw = std::fs::read_to_string(&path)?; + let parsed: StoredTranscript = match serde_json::from_str(&raw) { + Ok(p) => p, + Err(_) => continue, + }; + out.push(RecordingInput { + recorded_at, + text: parsed.transcript.text, + }); + } + out.sort_by(|a, b| a.recorded_at.cmp(&b.recorded_at)); + Ok(out) +} + +fn stem>(p: P) -> String { + p.as_ref() + .file_stem() + .map(|s| s.to_string_lossy().into_owned()) + .unwrap_or_else(|| "unknown".to_string()) +} + +async fn call_llm( + http: &reqwest::Client, + settings: &Settings, + system_prompt: &str, + user_content: &str, +) -> Result { + let call = LlmCallSettings { + base_url: &settings.llm.url, + api_key: &settings.llm.api_key, + model: &settings.llm.model, + temperature: settings.llm.temperature, + }; + let timeout = Duration::from_secs(settings.llm.timeout_seconds); + srv_llm::chat_once(http, &call, system_prompt, user_content, timeout) + .await + .map_err(|e| anyhow::anyhow!("llm chat failed: {e}")) +} diff --git a/experiments/src/lib.rs b/experiments/src/lib.rs new file mode 100644 index 0000000..c61694e --- /dev/null +++ b/experiments/src/lib.rs @@ -0,0 +1,98 @@ +//! Helpers shared by the experiment binaries. +//! +//! Sandbox tooling for iterating on Whisper / LLM prompts against a real case +//! without modifying production state. All outputs land under `case_/runs/` +//! and `case_/compare/` — never in `tmpdata/`. +//! +//! **Security note**: The Ionos bearer key flows through this code as a +//! `String` inside `Settings.llm.api_key`. Helpers here MUST NOT persist or +//! print the key. `RunMeta` deliberately stores only the URL/model/timestamp — +//! never the key — so on-disk audit logs are safe to share. + +use std::path::Path; + +use anyhow::Context; +use serde::Serialize; +use time::OffsetDateTime; +use time::format_description::well_known::Iso8601; + +/// Generate a run identifier in the form +/// `_w-_l-_run`. Used as the directory name under +/// `case_/runs/`. +pub fn run_id(whisper_variant: &str, llm_variant: &str, run_index: u32) -> String { + let now = OffsetDateTime::now_utc(); + let stamp = now.format(&Iso8601::DEFAULT).unwrap_or_else(|_| "unknown".into()); + let safe_stamp = stamp.replace(':', "-").replace('.', "-"); + format!("{safe_stamp}_w-{whisper_variant}_l-{llm_variant}_run{run_index}") +} + +/// Read a prompt file. Returns empty string for an empty file (used as +/// "no prompt" signal by `run_full_case`'s settings override). +pub fn load_prompt(path: &Path) -> anyhow::Result { + let content = std::fs::read_to_string(path) + .with_context(|| format!("reading prompt file {}", path.display()))?; + Ok(content.trim_end_matches('\n').to_string()) +} + +/// Atomically write content to `path` via a sibling tempfile + rename. +/// Same pattern the server uses for `document.md` — ensures readers never +/// observe a partial file. +pub fn atomic_write(path: &Path, content: &str) -> anyhow::Result<()> { + let parent = path + .parent() + .with_context(|| format!("path {} has no parent", path.display()))?; + std::fs::create_dir_all(parent)?; + let mut tmp = tempfile::Builder::new() + .prefix(".tmp-") + .tempfile_in(parent)?; + use std::io::Write; + tmp.write_all(content.as_bytes())?; + tmp.flush()?; + tmp.persist(path) + .map_err(|e| anyhow::anyhow!("persist failed: {}", e.error))?; + Ok(()) +} + +/// Snapshot of variant identities + provenance for one run. Serialized +/// as `meta.json` next to the produced `document.md`. **Never contains +/// the API key** — only the LLM endpoint URL and model name. +#[derive(Debug, Serialize)] +pub struct RunMeta { + pub run_id: String, + pub created_at_utc: String, + pub case: String, + pub whisper_variant: String, + pub whisper_hotwords_variant: Option, + pub llm_variant: String, + pub whisper_url: String, + pub llm_url: String, + pub llm_model: String, + pub llm_temperature: f32, + pub vocab_dir: String, + pub vocab_loaded: usize, + pub gazetteer_dict: GazetteerDictMode, + pub timings_ms: RunTimings, + pub recordings: Vec, +} + +#[derive(Debug, Serialize)] +pub enum GazetteerDictMode { + NoDict, + SpellbookHunspell { stem: String }, +} + +#[derive(Debug, Default, Serialize)] +pub struct RunTimings { + pub whisper_total_ms: u64, + pub gazetteer_total_ms: u64, + pub llm_ms: u64, + pub wallclock_ms: u64, +} + +#[derive(Debug, Serialize)] +pub struct RecordingMeta { + pub recorded_at: String, + pub audio_path: String, + pub whisper_chars_raw: usize, + pub whisper_chars_after_gazetteer: usize, +}